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Single-molecule spectroscopy

Spectroscopic and spectrometric measurements offer valuable chemical and/or structural information, and are in some cases label-free. However, most spectroscopic/spectrometric methods are originally designed for bulk samples and offer limited spatial information. Integrating the high spatial resolution of super-resolution microscopy with spectroscopic/spectrometric methods thus offers intriguing opportunities to probe multiple aspects of a given system.

Our lab have combined single molecule spectroscopy with single molecule localization microscopy to achieve the true-color, spectrally-resolved STORM (SR-STORM) images. Single molecule spatial information use for super-resolution light microscopy can be readily correlated with their spatially well-resolved spectra for rich 4D characterization of various species. This wide-field single-molecule spectroscopy and super-resolution method is also expected to resolve in situ the fluorescence emission spectra of single product molecules of a fluorogenic reaction and help unveil rich, multi-path reaction pathways.

Schematic of the spectrally resolved STORM system.  (Top right) Comparison of STORM (left) and diffraction-limited images (right) of merocyanine molecules. (Bottom right) A small region of the concurrently acquired fluorescence images (left) and spectra (right) of three merocyanine molecules in water, obtained in a 33-ms snapshot.

Statistics of single-molecule spectra reveals two spectrally distinct isomers of the product merocyanine, and the relative populations of the two isomers depend strongly on solvent polarity. (Top) Distribution of the measured emission spectral means and photon counts for single mero-cyanine molecules produced from the ring-opening reaction of spiropyran, in five solvents of increasing polarity (n-hexane, acetone, ethanol, methanol, and water). (Bottom) Representative single-molecule spectra for the two isomers detected in n-hexane, ethanol, and water. 

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